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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagagctcggagaaaatttgctaatccttattttatatctaagatcttccttgtaactgtagtgaatatctcatcatcttaaattttgtctgactagCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G45170.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478591|gb|EG521183.1|EG521183
EST:     AGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGTNNNNNNNGCAG                         CGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGC
genomic: AGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGTAAAAAAAGCAGgtatagagct ... gtctgactagCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGC
EST: gi|116478590|gb|EG521182.1|EG521182
EST:     AGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGTNNNNNNNGCAG                         CGTCCGCTGAGAAACAGAGGATAGCAGA-GAAGTTGCATCA-TGCTAAAGC
genomic: AGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGTAAAAAAAGCAGgtatagagct ... gtctgactagCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcttccttgtaactgtagtgaatatctcatcatcttaaattttgtctgactagCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG
        ttgtaac  putative branch site (score: 2)
                                         ttttgtct  putative PPT
                              atcatcttaaatttt  TA-rich tract