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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactatatacaagtgatcaaaacagaggattttcctattgacgttttcttctgttttgctctgtttagGTGAGAAATTTGCGATGATGTCCGGTACAAGTATGGCTGCTCCTCATGTAGCTGGTGTGGCTGCATTAATCAAACAAAGTTATCCACAGTTTACTCCTTC

Basic information

species Arabidopsis thaliana
transcript AT5G44530.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44530.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------gtaaactatatacaagtgatcaaaacagaggattttcctattgac-gttttcttctgttttgctctgttt-agGTGAGAAATTTGCGATGATGTCCGGTACAAGTATGGCTGCTCCTCATGTAGCTGGTGTGGCTGCATTAATCAAACAAAGTTATCCACAGTTTACTCCTTC
                                | | ||  | | || |||||| |     |   |      || ||  |  |  ||   || ||   | ||| ||| ||||| ||||| |||||||| || ||||| |||||||||||||||||  ||||  | || ||||| || || || |  | |||  |||| | ||| ||
gtatacacaaactaaaaagtgcaatgtgggtggcacacc-tttccatgtgatctaccactacattcaaaacatggattggctaattaacttatgaattatttcagGAGAGAACTTTGCAATGATGTCTGGGACAAGCATGGCTGCTCCTCATGTTTCTGGGCTTGCAGCATTGATTAAGCAGAAGTTTCCCAAGTTCAGTCCGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcaaaacagaggattttcctattgacgttttcttctgttttgctctgtttagGTGAGAAATTTGCGATGATGTCCGGTACAAGTATGGCTGCTCCTCATGTAGCTGGTGTGGCTGCATTAATCAAACAAAGTTATCCACAGTTTACTCCTTC
                      tattgac  putative branch site (score: 2)
                              ttttcttctgttttgc  CT-rich tract
                              ttttctt  TA-rich tract