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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttttcccatcttatctgtcgttaaatttttccactttgatgtgaatctcaataacagtatatacatagaaacgagtttttgctttattttagtcaccagctaacattcttaacgtggttgacaacatgtagGTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTAT

Basic information

species Arabidopsis thaliana
transcript AT5G44180.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44180.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv12s0028g03090.t01 (Vitis vinifera), 3'ss of exon 5
gtgacttttcccatcttatctgtcgttaaatttttccactttgatgtgaatctcaataacagtatatacatagaaacgagtttttgctttattttagtcaccagctaacattcttaacgtggttgacaacatgtagGTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTAT
                            ||| ||   | |   |       ||   | |  |||||| || ||     ||||||| |  |  |||         ||   |||   |  |  |||   ||  |  |||| |||||||| ||||| || ||  | ||||||||||| ||||||||||||||  |||| ||||||| ||| || || |||||||||
-------------------------gagaatattataagtaacactgctggctagttgaatgtatatgcacagtttgcagttttttccatccttt---------ctggtattga-attgcagtttgaaattt-cagGTTTGGAGATTTTTAATTACCTTTTCTGACGTTCTTGGGCTTTGGCCATTTACTATGGATGAGTTTGTTCAAGCTTTTCATGACTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgctttattttagtcaccagctaacattcttaacgtggttgacaacatgtagGTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTAT
      tttattttagt  TA-rich tract