1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgttgcgtattttcaaccttgcgttatactatttcggtcttctaatgtttgattctaatgtcgatatttgtaattccttggaaataatgcatctgtggtatctttgactgtggctatcatgttccttatattcaaatctaaaacattttcacttgtttctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCG
species | Arabidopsis thaliana |
transcript | AT5G41260.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAG CTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGEST: gi|19877578|gb|AU238409.1|AU238409
genomic: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGgttcgttgcg ... tctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAG
EST: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAG CTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGEST: gi|86059169|gb|DR354926.1|DR354926
genomic: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGgttcgttgcg ... tctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAG
EST: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAG CTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAG
genomic: AGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGgttcgttgcg ... tctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAG
gctatcatgttccttatattcaaatctaaaacattttcacttgtttctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCG
atctaaa putative branch site (score: 3)
ttttcacttgtttct putative PPT
ttatattcaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttgcgtattttcaaccttgcgttatactatttcggtcttctaatgtttgattctaatgtcgatatttgtaattccttggaaataatgcatctgtggtatctttgactgtggctatcatgttccttatattcaaatctaaaacattttcacttgtttctgcaacagCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG