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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgtcaaccttttatgtttgctttatactgaaaatggggtcttttcatctatatcatataacaagactatttgtctgattagGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G40550.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40550.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G08050.1 (Glycine max), 3'ss of exon 9
---gtaagttcg----tcaaccttttatgtttgctttatactgaaaatggggtcttttcatctatatcata--taacaagact---atttgtctg-attagGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAG
   ||   || |    |  ||| ||| ||||| |||  | ||  || ||   | ||| |  ||||   ||   |   ||  ||   |  ||| || |  || ||  || | ||||| || |||||||||||||||||| | || || ||||| ||||| || ||||||||||||||  || | |||||||| |||||||| 
actgtgcttttggaactggaccctttgtgttttcttctt-cttcaactgttctgtttgccactatgctatggttgttaactctcgaaagtgtttggaacagTTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA

upper sequence: AT5G40550.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G07460.1 (Glycine max), 3'ss of exon 8
-----gtaagttcg----tcaaccttttatgttt---gctttatactgaaaatggggtcttttcatctatatcatataacaagactatttgtctgattagGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAG
     ||   || |    |  ||| ||| |||||    |||  |  |     |    | || |  |||||      ||||      | |  |  ||  || ||| || | ||||| || |||||||||||||||||| | || |||||||| ||||| || |||| |||||||||  || | |||||||| |||||||| 
taactgtgcttttggaactggaccctttgtgtttttttcttcttctttttcttcaactgttctgttctatggttgttaactctgaaagtgattggaacagTTATGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCTCAAAGGACAGTGCCATTCCGCAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaaatggggtcttttcatctatatcatataacaagactatttgtctgattagGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAG
                            atataac  putative branch site (score: 3)
                                          tttgtct  putative PPT
                   atctatatcatataa  TA-rich tract