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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttgactgcagactaaatttcgttgctattttgttcctatggtagatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 8
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G156638_T02 (Zea mays), 3'ss of exon 5
-aatttgactgcagactaaatttcgttgctattttgttcctatggtagatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG
  | ||   || |   |  | |    ||||    |  | || |  | |    | ||| | ||    ||||||| |  ||      | | | || |  ||||||| ||||| || || ||||||||||| ||||||||||| ||||| || |||||||| || |||||| | ||||| ||||  ||||||| |||| |  | 
ttacttacgtgtatttttcaataaagtgctgccattctgctgttctgg-cattttcttagatgcaattgaagtagccttcttgaaccttaacatttaatagATATACTACCGCGATCGACATGTGGTCGTTTGGCTGCATAGTTGCTGAACTGTTTCTAGGTTTGCCATTGTTTCCTGGAGCGTCAGAATATGATGTGCTT

upper sequence: AT5G35980.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 10
-----aatttgactgcagactaaatttcgttgctattttgttcctatggtagatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG
      |  |   |   |  |  |||     |   ||||||| |  |  ||     ||| ||   || | |    |    ||||     ||||||   | |  |||||||| ||||||||||| |||||||| ||||| ||||| || || ||  ||||||||||||| ||| |||| || || | ||||||||||||| | |||
tgtttcacattcttaatgcgtgtattcttcagaagttttgtttcctttttaa----tatttatttttgtgtacttgcttcattttagtccttaactcttat-cagATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTG

upper sequence: AT5G35980.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 7
aatttgactgcagactaaatttcg-ttgctattttgttcctatggtagatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG
  ||||| ||||    ||||||   |    ||   ||| || |  |  |   | |  |    || | ||  ||   | || |   |||||||  | |  || || ||||| ||||||||||||||||||||||| || || ||||| ||| ||||||| || ||||| |||||||| |||| ||||||||||||| |  | 
tgtttga-tgcatttgaaattttaatcatgatagggtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG
                                    aggcttaac  putative branch site 
      tatctaaaattatctt  TA-rich tract