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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttagttatttcggttcatttcttctctgcatcattttcagtaaattatactttttaactttcaaatgtgagcgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA

Basic information

species Arabidopsis thaliana
transcript AT5G28350.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 8
gtagttagttatttcggttcatttcttct-ctgcatcattttcagtaaattatact---ttttaactttcaaatgtgagcgcttgagt-tgc-ttttcatgcacctta-aagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA
|||  |   || ||      | || |||| ||   |  | |     |  |||| ||   ||||   ||| |||| |   || |  ||  ||| || | || ||  ||  ||||||| | ||||||||||||||||  ||||| ||||  | || || |||||||| ||||||||||| ||||||||| ||||  |||||||||| |  |  ||||||      |   | |
gtaaatgcatacttgcacatagtttttctacttttttttgtctcaaatgttatgctccattttttatttgaaatttcttcgataaagcctgcattgttatacattttttaagtgataacatgacaaacagCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCAGCAATGCGATTCATTCCTGATCAACTTCCAAGAGAATCTATTTCAAACA

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 8
------gtagttagttatttcggttcatttcttctctgcatcattttcagtaaattatactt-tttaactttcaaatgtgagcgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA
      | |     | |  | | ||   | ||||| ||  |||| ||| ||   || |  || ||| |  ||     |  |  || ||  | | | | |||     || ||||||| | ||||||||||||||||  ||||| ||||  | || || |||||||| ||||||||||| ||||||||| ||||  ||||||||||    |  ||||||      |   | |
gtaaatgcatactttcacatagtttttctacttctttgtctcatgttctgttccttttttttatttgaaatttcttcgataaagcctgcatcgttatacat---tttttaagtgataacatgacaaacagCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCAGCAATGCGATTCATTCCTGATCAATTTCCAAGAGAATCTATTTCAAACA

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtagttagttatttcggttcatttcttctctgcatcattttcagtaaattatactttttaactttcaaatgtgagcgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA
               ||  || || ||  || |  ||     | ||||   |||  ||    ||  |   |  | |    || |||||  |    | ||  | ||||||||  || ||||||| |||||||||||||||||| |||||| ||||| | || |||||||||||||||| ||||||  |||| ||| | ||| | ||||||||||  |  |||||   |   |   | |
gtaaaaaaaaaaaactatctaatt-ttatgggtggttgtgaatttgcaaagtttcgag----ttgcataatgaatcagagaattgtga-tggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgagcgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA
                               ttaaagtgattaaat  TA-rich tract