Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggggtttgaaaaaaagaatacaaattctaaactgtgtttgaagttatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA

Basic information

species Arabidopsis thaliana
transcript AT5G27030.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 9
gtatgggggtttgaaaaaaagaatacaaattctaaactgtgtttgaagttatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA
                 ||    || || || | || |||||   |  |   | | ||  ||||      |  || |    | |     |||  ||   | ||||||| |||   |  || |||||  || | ||||||||||    |||||| ||| |||| |||| ||||||||||||||||||||| ||    || |||  
---------------gtaatttctataatttttgaattgtgt--aatatctcactactaatatcctgacataagcat---aactacatatttccat-tgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 8
gtatgggggtttgaaaaaaagaatacaaattctaaactgtgtttgaagttatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA
                 ||    || || || | || |||||   |  |   | | ||  |||| || |  |     |   | |     |||  ||   | ||||||| |||   |  || ||||| ||| | ||||| ||||     ||||| ||| |||| |||| ||||||||||||||||||||| ||    ||||||  
---------------gtaatttctataatttttgaattgtgt--aatatctgactactaatatc-ctgacataaacat--aactacatatttccat-tgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttctgttatctcttatttggctttctgaatgaccgtttgaatgccatcagTTGGATCTGCGACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACA
               tcttattt  TA-rich tract