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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccactctctatatactttcatttcattagttacaacctttctatattttggtaatcacaacattttgtgaccatcaagttatatcatccttgtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997413|gb|EL069682.1|EL069682
EST:     CGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: CGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446415|gb|EG489007.1|EG489007
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446282|gb|EG488874.1|EG488874
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446426|gb|EG489018.1|EG489018
EST:     AAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: AAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|125115775|gb|EL165591.1|EL165591
EST:     ATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: ATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|47828757|gb|CK118441.1|CK118441
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116447714|gb|EG490306.1|EG490306
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACGT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|125135435|gb|EL175758.1|EL175758
EST:     CCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCTTGGTCCACCG
genomic: CCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446304|gb|EG488896.1|EG488896
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116439131|gb|EG481723.1|EG481723
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|47827929|gb|CK117613.1|CK117613
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446293|gb|EG488885.1|EG488885
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|124860083|gb|EH944520.1|EH944520
EST:     CGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAA-CCCCTGGTCCACCG
genomic: CGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116446271|gb|EG488863.1|EG488863
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|125318826|gb|EL332911.1|EL332911
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
EST: gi|116444210|gb|EG486802.1|EG486802
EST:     TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACAT                         CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
genomic: TCCTCCGGAAAAACTCACTGCCATGACGGACTCACTCGCAAACCTTACATgtaccactct ... gtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtaatcacaacattttgtgaccatcaagttatatcatccttgtgtttacagCTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG
                                        tccttgt  CT-rich tract
                             aagttatat  TA-rich tract