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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatgcatcctgtgctgctcttctagatatatttcttctttaattctgttcactaacctatgtatggcccgatctctgaatttattggtatttccttgccattttttgcataaaaagttctgccagttttatatctctttagtttaactctaaaaactttaaatatttcattggcagGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTG

Basic information

species Arabidopsis thaliana
transcript AT5G25060.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25060.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 8
gtttgtgatgcatcctgtgctgctcttctagatatatttcttctttaattctgttcactaacctatgtatggcccgatctctgaatttatt-ggtatttccttgccatt--ttttgcat--aaaaagttctgccagttt-tatatctctttagtttaactctaaaaactttaaatatttcattggcagGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTG
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------------------------------------------------------------------------------------cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttga----agcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACC---AGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagttttatatctctttagtttaactctaaaaactttaaatatttcattggcagGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTG
                         ctctaaa  putative branch site (score: 3)
                                           tttcatt  putative PPT
               tttagtttaactctaa  TA-rich tract