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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT

Basic information

species Arabidopsis thaliana
transcript AT5G23430.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 7
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatc---gtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                                        | |  |  |||||   |    || | |  |       | | | |  |  ||    | | | |   ||| | | |   ||||   | || ||||||| ||||| ||||| ||||||||||||   || ||||| |||||||| ||| |||| ||| | ||||| ||||||||||| ||||||||||| |
---------------------------------------------------------------------------------------gtatggtcattactttctcatgtt-acagcatg-gcaacaaatttcttctccatgtttcctagagataaacttctcttaatctaagcagGTTTTCTCTTGGGAACCAATAAGATGTCATGATACCGTTGATGTGGGATGGTCTAGACTGTCTGATCTAAATGTCCACGAGGGAAAACTTCTTGGTTGTT

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 7
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatc--gtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                                    | || ||  | ||| ||||  || |      |  |    | ||  |   ||    | ||| ||   | |   |  |   ||||    | || ||||||| ||||||||||| ||||| ||||||   || ||||| |||||||| ||| |  | ||| ||||||| ||||||||||| ||||||||||| |
-----------------------------------------------------------------------------------gtagtgctattattttctcaagtgatcatgtcaagcttgcttcttgtacccta---tgacttctaaagatatttttttctcaaactaagcagGTTTTCTCCTGGGAGCCAATAAGATGCCATGATACTGTCGATGTGGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTT

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G160702_T01 (Zea mays), 3'ss of exon 7
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                                                                                        ||   |      |    |  || |     ||  | || ||||||| ||||||||||| ||||| ||||||   ||||| || |||||||| ||| |  | ||| ||||||| || |||||||| ||||||||||| |
-----------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactgaactagagattcgtaaacttttcttaaattaa--gcagGTTTTCTCTTGGGAGCCAATAAGATGCCATGATACTGTGGACGTGGGATGGTCTAGACTTGCCGATTTGAATGTCCATGAGGGAAAACTTCTTGGTTGTT

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 8
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                             | | |    ||| ||| ||| | | ||||      ||  |   ||||  ||      | ||     ||     | || || ||||        ||| ||||||| ||||| || || ||||| ||||||   |||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||||||||
-----------------------------------------------------------------------------gtaagccctgttttta-gttgatttattt------aaggttatcatt--tatcaaggtaacgatgttct----gcttgattctgtt-------tagGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATGTTCATGAAGGAAAACTTCTTGGTTGCT

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G00890.1 (Glycine max), 3'ss of exon 8
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                             | | |   | || ||| ||| | | ||||      ||  ||  ||||  ||      | ||    |||     | ||  | ||||        ||| ||||||| ||||| || || ||||| ||||||   |||||||| || ||||| |||||||||||| | ||| |||| || ||||| |||||||| ||||
-----------------------------------------------------------------------------gtaaggcccattttta-gttgatttattt------aaggtaatcatt--tatcaaggtgacgatgctct----gcttggttctgtt-------tagGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCT

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                                                     |  | |||   |  ||  |   |       ||  | ||  ||  |   | |||||||   |   || |  |   |   |   ||| |  |  | |   |  ||| |||| |||||||| ||||| ||||| |||||||  |||||||| || ||||| ||||| |||||| | ||  |||| ||||||||||| || || ||||
------------------------------------------------------------------gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaattt---ttactcaatttcaaacgatact--ttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT
                                 tttaat  TA-rich tract