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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccgaatcgaaagctgaagcctttgttatttgaaatctacatttggtaacacaaaacatctgtttttgtcatctttttttcttctgcagATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATGGGCAAACTACGACT

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124709532|gb|EH800934.1|EH800934
EST:     GTGCATCGGTTTTCAAAGGATACAGAATCAAGGGATAACGATCCTTGGAG                         ATTTGGTTCTTAAAGACAAGATCTTTGTCTATGAT
genomic: GTGCATCGGTTTTCAAAGGATACAGAATCAAGGGATAACGATCCTTGGAGgtaacccgaa ... tcttctgcagATTTGGTTCTTAAAGACAAGATCTTTGTCTATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctacatttggtaacacaaaacatctgtttttgtcatctttttttcttctgcagATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATGGGCAAACTACGACT
         tggtaac  putative branch site (score: 2)
                      catctgtttttgtcat  putative PPT
                                    atcttttttt  TA-rich tract