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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcattttcttatcaagcttttcgagttagttttctgatcacaaagttgacaaaacaatctgtctttttggtagGTACCTGAGTATTGGGAAACCTACGTAGGCGAGGTGGATCAAGAGAGGGAAATGTGGTTGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTG

Basic information

species Arabidopsis thaliana
transcript AT5G22640.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125022305|gb|EL094574.1|EL094574
EST:     GAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAA                         GTACCTGAGTATTGGGAAGCCTAC
genomic: GAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAAgtgggtcatt ... tttttggtagGTACCTGAGTATTGGGAAACCTAC
EST: gi|125138237|gb|EL177720.1|EL177720
EST:     AAGAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAA                         GTACCTGAGTATTGGGAAACCTAC
genomic: AAGAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAAgtgggtcatt ... tttttggtagGTACCTGAGTATTGGGAAACCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgagttagttttctgatcacaaagttgacaaaacaatctgtctttttggtagGTACCTGAGTATTGGGAAACCTACGTAGGCGAGGTGGATCAAGAGAGGGAAATGTGGTTGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTG
                                       tctgtcttttt  CT-rich tract
       ttagtttt  TA-rich tract