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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagataacttatcccgatgcaatcaatagtaaagtgaacactgttttgatatttttggtccatcaattctgcagGACAATGATGTGATTGCAAGTCAATTAGACGAAGAAGCGTTTTCAGCTCTGTGGAACAGATCCGAGAAAGCATGGGAATCACTCTTAGACGAACTATCGG

Basic information

species Arabidopsis thaliana
transcript AT5G22620.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125070441|gb|EL135849.1|EL135849
EST:     AACAAATGAATGAGCTTGATGTTGAGAGTGTTCTTCGCAAATCCAATAAG                         GACAATGATGTGATTGCAAGTCAATTAGACGAAGAAGCG
genomic: AACAAATGAATGAGCTTGATGTTGAGAGTGTTCTTCGCAAATCCAATAAGgcaagataac ... aattctgcagGACAATGATGTGATTGCAAGTCAATTAGACGAAGAAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcaatagtaaagtgaacactgttttgatatttttggtccatcaattctgcagGACAATGATGTGATTGCAAGTCAATTAGACGAAGAAGCGTTTTCAGCTCTGTGGAACAGATCCGAGAAAGCATGGGAATCACTCTTAGACGAACTATCGG
                        ttttgat  putative branch site (score: 4)
                      tgttttgatattttt  TA-rich tract