1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccatatattttcatttttcaagcaaatttttttgttgacgagaatataattaatacaaactttaatttgtttcaactttgtttgtgtctgtcgtgatagGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATTAAG
species | Arabidopsis thaliana |
transcript | AT5G21060.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGACGACCTCGGTGGCATGGATGTTGCTAGAAAG GGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATTEST: gi|124997088|gb|EL069357.1|EL069357
genomic: TGACGACCTCGGTGGCATGGATGTTGCTAGAAAGgtatgaacat ... gtcgtgatagGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATT
EST: ATCCACGTGACGACCTCGGTGGCATGGATGTTGCTAGAAAG GGTTTGATTCTTGCTCEST: gi|86084658|gb|DR380417.1|DR380417
genomic: ATCCACGTGACGACCTCGGTGGCATGGATGTTGCTAGAAAGgtatgaacat ... gtcgtgatagGGTTTGATTCTTGCTC
EST: GATGTTGCTAGAAAG GGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTWTGGACAGCATT
genomic: GATGTTGCTAGAAAGgtatgaacat ... gtcgtgatagGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATT
tataattaatacaaactttaatttgtttcaactttgtttgtgtctgtcgtgatagGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATTAAG
ttaatacaaactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccatatattttcatttttcaagcaaatttttttgttgacgagaatataattaatacaaactttaatttgtttcaactttgtttgtgtctgtcgtgatagGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATTATGGACAGCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT