1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagtgttttctatttctctacttctatcttgttctctctacattttgcctctctcttatgtttttggttaatacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG
species | Arabidopsis thaliana |
transcript | AT5G19990.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAG GCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACEST: gi|125225984|gb|EL240069.1|EL240069
genomic: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGgtaaagtgtt ... atacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACAC
EST: TGGCGCTTCAGGTGCTGAGCTGAAG GCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACEST: gi|86075404|gb|DR371161.1|DR371161
genomic: TGGCGCTTCAGGTGCTGAGCTGAAGgtaaagtgtt ... atacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACAC
EST: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCT-AAG GCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACEST: gi|124971086|gb|EL044876.1|EL044876
genomic: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGgtaaagtgtt ... atacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACAC
EST: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAG GCTGTGTGCACGGAGGCGGGAATGTTTGCT
genomic: TGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGgtaaagtgtt ... atacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCT
atcttgttctctctacattttgcctctctcttatgtttttggttaatacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG
ggttaat putative branch site (score: 4)
ttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgttttctatttctctacttctatcttgttctctctacattttgcctctctcttatgtttttggttaatacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA