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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgacctgcgataattcaccattttttctccttttcctcttcagtattattttctgctcagtttttacttgttttttttccatcattagGTATGTTCATGGGGAGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTG

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 3'ss of exon 3
gtacgacctgcgataattcaccattttttctccttttcctcttcagtattattttctgctcagtttttacttgttttttttccatcattagGTATGTTCATGGGGAGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTG
             ||||     ||  |||   |   |  | | || | |  |||       ||     || |  |              |||| ||||| |||||||||||||| ||||| ||||| || || ||||| || || || ||||||||||| ||||| || || ||| | || || |||||||
------------gtaatatctgataatttgaacccatgttttccaatgtcctttataatcaagcaacaaccttgtgc------------agGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTG

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G060611_T02 (Zea mays), 3'ss of exon 8
gtacgacctgcgataattcaccattttttctccttttcctcttcagtattattttctgctcagtttttacttgttttttttccatcattagGTATGTTCATGGGGAGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTG
           |  || |    |  ||||   |  |   | |  | | | | ||| |  |||  | ||||| |  |||| |        |||| || || |||||||| ||||| |||||||||||||| || |||||||| || || ||||||||||||||||| || || ||| | || || |||||||
-----------gtaaacttgttaaattttgatccatgtttttcgaatgt-actttgtaatca--tattactaggcttttct--------agGTCTGCTCTTGGGGAGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTG

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 8
gtacgacctgcgataattcaccattttttctccttttcctcttcagtattattttctgctcagtttttacttgttttttttccatcattagGTATGTTCATGGGGAGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTG
     | ||   |||||  || |||| |  |  || || |      |      |  |    |  || |  | | || || ||  |||   ||| || ||||||||||| ||||| || || || ||||| || |||||||| || || |||||||| |||||||| || || ||| | |||||||||||||
--gtaagcttttataat--actatttatcttggttatctttgcttctgccccctcttatgtatgttatcttcgcttcttatctttca---gGTTTGCTCATGGGGAGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcttcagtattattttctgctcagtttttacttgttttttttccatcattagGTATGTTCATGGGGAGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTG
                           tttttacttgtttttt  CT-rich tract
                           tttttacttgtttttt  TA-rich tract