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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattttacagagatctagctaatccgtgttgcaaaactattgtgtaacaaataactcagattgcaacggttgcttattgcacaagtaactaggcttgctacacaagtaactaggtgaatatgctgttttcttcaatatcctaacaccccctctctcttgactcgcaagGCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGATATTCCAGTGGGCT

Basic information

species Arabidopsis thaliana
transcript AT5G18860.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064771|gb|DR360528.1|DR360528
EST:     TCTCTCTTCTACCTCCTCAAAGTTCCGGTGGATAAAATCGATTTGAAG                         GCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTG
genomic: TCTCTCTTCTACCTCCTCAAAGTTCCGGTGGATAAAATCGATTTGAAGgtatgatttt ... gactcgcaagGCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTG
EST: gi|86064770|gb|DR360527.1|DR360527
EST:     TCTCTCTTATACCTCCTCAAAGTTCCGGTGGATAAAATCGATTTGAAG                         GCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTG
genomic: TCTCTCTTCTACCTCCTCAAAGTTCCGGTGGATAAAATCGATTTGAAGgtatgatttt ... gactcgcaagGCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatatgctgttttcttcaatatcctaacaccccctctctcttgactcgcaagGCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGATATTCCAGTGGGCT
                                ccccctctctcttgac  CT-rich tract
                 ttcaatat  TA-rich tract