Sequence
atgc intronic sequence ATGC exonic sequencegtatgactttcccatggcaacaagtctactttgagatgttctgtctgattttggttttgcatccatctcagGTTCGTGTGGGAAAAGAAAGAGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCTTCTGAAATGCAGTCAGTAATTTCAT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G14260.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G14260.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 8
gtatgactttcccatggcaa---caagtctactttgagatgttctgtctgattttggtttt---gcatccatct-cagGTTCGTGTGGGAAAAGAAAGAGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCTTCTGAAATGCAGTCAGTAATTTCAT
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gtacaatgtcaagcttgcacactttatcttatcttgtgcttctttgttttccttgttctttaatgtaccctgctgcagGTTTCTGTAGGAAAAGAAAGAGAAGCTGTTTCAGACATGCTCCCTTATCTGCGATTGGGCTATGTTTCAGATCCATCTGAGATGCAGTCTGTTATCTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125040608|gb|EL112877.1|EL112877EST: AGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAG GTTCGTGTGGGA
genomic: AGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAGgtatgacttt ... tccatctcagGTTCGTGTGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaacaagtctactttgagatgttctgtctgattttggttttgcatccatctcagGTTCGTGTGGGAAAAGAAAGAGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCTTCTGAAATGCAGTCAGTAATTTCAT
gtctgat putative branch site (score: 4)
tccatctc putative PPT
tgatttt TA-rich tract