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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgtgagctttattagtctcaatttatacaagttaattcgtattgttaattatcatcttactctactttttgtgctgatatggtatattaagagtttcatgtattccatgacagcatatacatttattgacttctggagtagaatgttacttatggaagataatagatattttgtctttgaaccagGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAAGCCGAGAAACGAATATCAGAGAACAG

Basic information

species Arabidopsis thaliana
transcript AT5G13560.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478203|gb|EG520795.1|EG520795
EST:     GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAA                         GTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA
genomic: GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAAgtaagtctgt ... tttgaaccagGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA
EST: gi|86063814|gb|DR359571.1|DR359571
EST:     GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAA                         GTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA
genomic: GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAAgtaagtctgt ... tttgaaccagGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA
EST: gi|164106309|gb|ES104705.1|ES104705
EST:     GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAA                         GTCGACAAGCTCAG
genomic: GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAAgtaagtctgt ... tttgaaccagGTCGACAAGCTCAG
EST: gi|116478208|gb|EG520800.1|EG520800
EST:     GAAAGAGACAACTAAGCAATGGTGACTCCCCAGATATACATGCTCAGAAA                         GTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA
genomic: GAAAGAGACAACTAAGCAATGGTGACTCACCAGATATACATGCTCAGAAAgtaagtctgt ... tttgaaccagGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctggagtagaatgttacttatggaagataatagatattttgtctttgaaccagGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAAATTCAACTTCCAAAGCCGAGAAACGAATATCAGAGAACAG
                                      ttttgtcttt  CT-rich tract
                         aagataatagatattt  TA-rich tract