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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgcttgactagaagccgaattgctatagacaatattccggttctttttaccgtttttattgaaagctcaactgtttttaccttcactggacagTTGTTTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATACCCAGCTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G13550.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13550.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 8
gtactgtgcttgactagaagccgaattgctatagacaatattccggttctttttaccgtttttattgaaa-gctcaactgtttttaccttcactggacagTTGTTTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATACCCAGCTACAG
 |   ||    | ||          ||| |    |    ||     | | |   |   | || |  |||  ||| | | |||       |   || |||||||||||||||||||||||| ||||| |  || ||||| ||||| ||||||||  | ||||
atgtagtataagtcttctcattcttttgattagtaagcaatcttactacatgacattatcttaaaggaactgctaatcagttaactttatttgtgaacagTTGTTTGGTCTTGGTGTTGCCAATATCTGTGGTTCATTCTTTTCAGCATACCCCACGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124863045|gb|EH947482.1|EH947482
EST:     ATTCAAATTCAGAG                         TTGTTTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATAC
genomic: ATTCAAATTCAGAGgtactgtgct ... cactggacagTTGTTTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctttttaccgtttttattgaaagctcaactgtttttaccttcactggacagTTGTTTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATACCCAGCTACAG
                                ctgtttttaccttc  CT-rich tract
              tttttattgaaa  TA-rich tract