Sequence
atgc intronic sequence ATGC exonic sequence...tcttcaggagttacggttttgcttgtggtcaatcaagtgtgagagtgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAACCATAGGGACAA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G13500.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G13500.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 7
-tcttcaggagttacggttttgcttgtggtcaatcaagtgtgagagtgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggt-gcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAA--CCATAGGGACAA
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gtgttttgggatctttactcgcactgt--ccaattatgaattcattctatgcacattatgatggaaatcatgataagactctatttgttttcacatttgcagGTGACTCTTGTGAAGATGGTGAACGAAGCAACTGCGAACCTTCCCCGGTGGGACACACAATAGATAGGCTATGGTTGAAAAGGATAAAGGCCATGAAACC--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86075298|gb|DR371055.1|DR371055EST: CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTG GTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG
genomic: CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttata ... gatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAACCATAGGGACAA
taataac putative branch site (score: 1)
ttaataacatattgt TA-rich tract