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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttcaggagttacggttttgcttgtggtcaatcaagtgtgagagtgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAACCATAGGGACAA

Basic information

species Arabidopsis thaliana
transcript AT5G13500.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13500.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 7
-tcttcaggagttacggttttgcttgtggtcaatcaagtgtgagagtgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggt-gcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAA--CCATAGGGACAA
 | ||  ||  |      |     |||   |||| | |  |       |    | | ||  || |   |        |    || |  | | |   | ||||||||| ||||||||||||||||| ||||| |||||||   | ||    |||||||| |  ||  |    |        |||  | |||  ||||     |  
gtgttttgggatctttactcgcactgt--ccaattatgaattcattctatgcacattatgatggaaatcatgataagactctatttgttttcacatttgcagGTGACTCTTGTGAAGATGGTGAACGAAGCAACTGCGAACCTTCCCCGGTGGGACACACAATAGATAGGCTATGGTTGAAAAGGATAAAGGCCATGAAACC--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075298|gb|DR371055.1|DR371055
EST:     CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTG                         GTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG
genomic: CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttata ... gatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaaccgtaatattgaatgactgtccttaataacatattgtgtgatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAACTCACATCCACACACAAAACACAAACCATAGGGACAA
                             taataac  putative branch site (score: 1)
                            ttaataacatattgt  TA-rich tract