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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactaattcgtttatactgtgttttctgtatatttactgaagaggattattgtatgttcaactttttctttgtgacatttgagtatgatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAGATTTATCAACCATGTCAGAATGCGCTAAGATTTTGTCACAG

Basic information

species Arabidopsis thaliana
transcript AT5G12370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 7
gtaaactaattcgtttatactgtgttttctgtatatttactgaagaggattattgtatgttcaactttttctttgtgacatttgagt----atgatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAGATTTATCAACCATGTCAGAATGCGCTAAGATTTTGTCACAG
 || |    |        |  | |  ||   | |||| |  ||       ||||   |  | ||   | |  |  | ||||||   |    |   | |  ||||| ||||||||||  |  | ||||| |||||||| ||||||||| | |||||  | || |||||||||||||| ||||||||||| || |||
-tataaggttcatgaggcaaagagccttacatgtattgatagacttt--ctattcctttctaaataatgtagtactaacatttagttttttacttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164185617|gb|ES173742.1|ES173742
EST:     GCAGTTGCTAATCTTCAGGATTACTGTAATG                         AATTGGAGAACAGGCTTTTATCTCGCTTTGATGCTGCATCACAGCGGAGAG
genomic: GCAGTTGCTAATCTTCAGGATTACTGTAATGgtaaactaat ... gatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAG
EST: gi|124740271|gb|EH831433.1|EH831433
EST:     TGCAGTTGCTAATCTTCAGGATTACTGTAATG                         AATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAG
genomic: TGCAGTTGCTAATCTTCAGGATTACTGTAATGgtaaactaat ... gatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggattattgtatgttcaactttttctttgtgacatttgagtatgatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAGATTTATCAACCATGTCAGAATGCGCTAAGATTTTGTCACAG
     ttattgtat  TA-rich tract