Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacctgttgcattgcaagaaatctatttaagaaacgcgtaagaaattctttctgacataaaagaagttgttgtagGTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCGAGTCCTCCAATCCATGGTGCATCAATCG

Basic information

species Arabidopsis thaliana
transcript AT5G11520.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502657|gb|HO208197.1|HO208197
EST:     ATGCGAAGAACATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATT                         GTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA
genomic: ATGCGAAGAACATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTgtaagaacct ... gttgttgtagGTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA
EST: gi|125047560|gb|EL119829.1|EL119829
EST:     ACTCTATGGAGAACGTGTTGGAGCTCTCAGCATT                         GTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA
genomic: ACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTgtaagaacct ... gttgttgtagGTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA
EST: gi|301502679|gb|HO208219.1|HO208219
EST:     ATGCGAAGAACATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATT                         GTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA
genomic: ATGCGAAGAACATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTgtaagaacct ... gttgttgtagGTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctatttaagaaacgcgtaagaaattctttctgacataaaagaagttgttgtagGTATGCAAATCAGCAGATGTTGCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCGAGTCCTCCAATCCATGGTGCATCAATCG
                             ttctgac  putative branch site (score: 2)
     tttaagaaa  TA-rich tract