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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgtgaaaagttatttgcagacatgagatttttgttttggtaaacatgtatttactaagcggttatgtccggtgaaaccttagttgggtggtttttgttcaaccgcagGCTGCTGTCCGCCTAGAAACATTGTTGGGGTTTTCCAAGTCTATATTGCGTCCACATCTACTTAGTAAG

Basic information

species Arabidopsis thaliana
transcript AT5G10690.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086040|gb|DR381799.1|DR381799
EST:     GTATCGTGAGAAGGTGGAAGACAATACCTTGGACGACTAGTGGAGGCATG                         GCTGCTGTCCGCCTAGAAACATTGTTGGGGTTTTCCAAGTCTATATTGCGT
genomic: GTATCGTGAGAAGGTGGAAGACAATACCTTGGACGACTAGTGGAGGCATGgtatgatgtg ... tcaaccgcagGCTGCTGTCCGCCTAGAAACATTGTTGGGGTTTTCCAAGTCTATATTGCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaagcggttatgtccggtgaaaccttagttgggtggtttttgttcaaccgcagGCTGCTGTCCGCCTAGAAACATTGTTGGGGTTTTCCAAGTCTATATTGCGTCCACATCTACTTAGTAAG
                                      tttttgttc  CT-rich tract
                                      tttttgtt  TA-rich tract