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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcgtccttattctttagtttgtgatacaattgtatattgttttacaatccttgccgcttattgctcactgcttgtaattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCGGTCTAGCTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTG

Basic information

species Arabidopsis thaliana
transcript AT5G10540.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060878|gb|DR356635.1|DR356635
EST:     TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAAAACTGCNACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: gi|116452131|gb|EG494723.1|EG494723
EST:     TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: gi|116476839|gb|EG519431.1|EG519431
EST:     TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: gi|124982464|gb|EL055272.1|EL055272
EST:     TCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: gi|86060877|gb|DR356634.1|DR356634
EST:     TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: gi|116452116|gb|EG494708.1|EG494708
EST:     TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG                         GAAGAACTGCGACCCTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatattgttttacaatccttgccgcttattgctcactgcttgtaattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCGGTCTAGCTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTG
                               tgctcac  putative branch site (score: 2)
                                         ttgtaatttt  TA-rich tract