Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaagaaatgtttttacaaaaactaacgaaggataacaactagtttcttgagtttgttgttgttcttaaactgttttgttgttgtagGCTGATCATCTGAGACATGAGACATTGCAACAGATGCATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTGTTAGCATTAGGGGAGTATTTCCAAA

Basic information

species Arabidopsis thaliana
transcript AT5G10030.1
intron # 8
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacaactagtttcttgagtttgttgttgttcttaaactgttttgttgttgtagGCTGATCATCTGAGACATGAGACATTGCAACAGATGCATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTGTTAGCATTAGGGGAGTATTTCCAAA
 ggataac  putative branch site (score: 3)
                                         ttttgtt  putative PPT
                              ttcttaaa  TA-rich tract