Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagacctgaaagaacatctactttcgtaaaatgcctcttgaaactagctctttagttacctgttacttttcctgcagATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCT

Basic information

species Arabidopsis thaliana
transcript AT5G08500.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08500.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G016894_T01 (Zea mays), 3'ss of exon 7
-------------gtaaagacctgaaagaacatctactttcgtaaaatgcctcttgaaactagctctt-----tagttacctgtta---cttttcctgcagATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCT
              ||      |  || |  || ||   | |||| |||| |  || | | || |  |      |  || ||  ||   |||    | ||||||||||||| |||||||||||||| || |||||||| || || || || ||||| || || || ||| | |||||  |  |  | ||||| ||||| ||
gtatctacaacatatagttttttctaatagaatgta---tagtaagatgcgttatgcatcaagttaatacaaacatctatcttatatatcttcgttttcagATATCCAGTTCTGGAACAAGAACAAGTCCATGGAAGGTCTATCGGCAAAATCTGTGGTTCTGAATTTTGTGTGTCAACTAGTTGTTTTCCTGTACCTTCT

upper sequence: AT5G08500.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S64_201V6.1 (Physcomitrella patens), 3'ss of exon 8
------gtaaagacctgaaagaacatctactt---tcgtaaaatgcctcttgaaactagct--ctttagttacctg------ttacttttcc---tgcagATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCT
      ||  |    | |   | ||| |   |   |  ||| ||   |||   |  |   |  | ||    || |       | | ||   |    |||||||| |||||||||||||||||||| || ||||||||| | || ||   |||||||||  | |||||| | || ||||| ||| | ||  | ||| || |
tgtttagtggaactttaactcagcattttactgaatgttaatatatgtctgtcatttgctttgccttgagcacataataagatcaattggtcggacgcagATATTCAGTTTTGGAACAAGAACAAGTCCATGGAAGGATTATCAGCACGGTCTGTCGTTATCAACTTTGTTTGCCAGTTGATCGTGTTTTTGTACTTGTT

upper sequence: AT5G08500.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ13811 (Selaginella moellendorffii), 3'ss of exon 8
gtaaagacctgaaagaacatctactttcgtaaaatgcctct-tgaaactagctctttagttacctgttacttttcctgcagATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCT
                         |  ||  | || || | ||  |||   |||| | | |     |   |    || ||||||||||||||||||||| ||||| || ||||| ||| |||| ||    || || ||  | |||||| |||||||| || || | ||||||||| || |
------------------------gtaagtttattgtctttgtggcactgtttcttaactca-----tgactacgatgtagATATCCAGTTTTGGAACAAAAACAAGTCGATGGAGGGATTGTCAGCTCGATCAGTTGTTGTCAACTTTTTCTGTCAGCTTGTCGTTTTCCTCTACTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtaaaatgcctcttgaaactagctctttagttacctgttacttttcctgcagATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCT
                                    cctgttacttttcct  CT-rich tract
                            tttagtta  TA-rich tract