Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttcaggatgtcccagttagaaatatatgaacttaacaaattcctcttttaaggatataacacttacacttactccttttaatctgaatatacatgtttgctatcctttcttctctaacttccatgcaaattgtagATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCT

Basic information

species Arabidopsis thaliana
transcript AT5G08390.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08390.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 7
gtaagttcttcaggatgtcccagttagaaatatatgaacttaacaaattcctcttttaaggatataacacttacacttactccttttaatctg--aatatacatgtttgctatcctttcttctc-taacttccatgcaaatt--gtagATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCT
                                                              |||     ||||  |  |   ||  |   ||  || | |  | ||  | ||  || ||     |||  | |    ||  |  | || ||||||| ||||| ||||||||||||||||||   || ||||| |||||||| |   |||| ||| | ||||| ||||||||||| ||||| ||||| |
-------------------------------------------------------------gtatggtcattactttctcatgttacagcatggcaacaaatttcttctccatgtttcctagagataaacttctcttaatctaagcagGTTTTCTCTTGGGAACCAATAAGATGTCATGATACCGTTGATGTGGGATGGTCTAGACTGTCTGATCTAAATGTCCACGAGGGAAAACTTCTTGGTTGTT

upper sequence: AT5G08390.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 7
gtaagttcttcaggatgtcccagttagaaatatatgaacttaacaaattcctcttttaaggatataacacttacacttactccttttaatctgaatatacatgtttgctatcctttcttctctaacttccatgcaaattgtagATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCT
                                        ||      |  | || | | |  || |   | |  ||| || ||| ||  ||    ||   |  |    ||  ||| ||||| ||||       ||   | || ||||||| ||||||||||||||||| ||||||   || ||||| |||||||| |   |  | ||| ||||||| ||||||||||| ||||| ||||| |
---------------------------------------gtagtgctattattttctcaagtgatcatg-tcaagcttgcttcttgtaccct----atgacttctaaagatatttttttctcaaact-------aa---gcagGTTTTCTCCTGGGAGCCAATAAGATGCCATGATACTGTCGATGTGGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTT

upper sequence: AT5G08390.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G160702_T01 (Zea mays), 3'ss of exon 7
gtaagttcttcaggatgtcccagttagaaatatatgaacttaacaaattcctcttttaaggatataacacttacacttactccttttaatctgaatatacatgtttgctatcctttcttctctaacttccatgcaaattgtagATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTC-AAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCT
                                                                                          |||||  || |  || |  | | ||||||    || ||      ||   | || ||||||| ||||||||||||||||| ||||||   ||||| || |||||||| | ||||| || || ||||||| || |||||||| ||||| ||||| |
-----------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactgaac-tagagattcgtaaacttttctt----aaatt------aa---gcagGTTTTCTCTTGGGAGCCAATAAGATGCCATGATACTGTGGACGTGGGATGGTCTAGACTTGCCG-ATTTGAATGTCCATGAGGGAAAACTTCTTGGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgaatatacatgtttgctatcctttcttctctaacttccatgcaaattgtagATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCT
                               ctctaac  putative branch site (score: 2)
     aatatacat  TA-rich tract