1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgacaatatacacaaccttagtgcaaactataattttgatttcagagtcttaactctctcttcaatttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGCTGTTTTACTTGTGTAACCAAATGTCCGGCACTGTCGTAGAAGTATGGA
species | Arabidopsis thaliana |
transcript | AT5G06360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG GAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGEST: gi|125033740|gb|EL106009.1|EL106009
genomic: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGGgtaagtgaca ... ttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATG
EST: AGGTTGTCTGGG GAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGEST: gi|86050594|gb|DR346349.1|DR346349
genomic: AGGTTGTCTGGGgtaagtgaca ... ttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATG
EST: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG GAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGEST: gi|86050593|gb|DR346348.1|DR346348
genomic: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGGgtaagtgaca ... ttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATG
EST: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG GAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGEST: gi|86072911|gb|DR368668.1|DR368668
genomic: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGGgtaagtgaca ... ttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATG
EST: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG GAAAATACGCTCAAGTGACAAACAATCTAGAGAACGACGGATGTATAAATG
genomic: CAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGGgtaagtgaca ... ttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATG
tgcaaactataattttgatttcagagtcttaactctctcttcaatttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGCTGTTTTACTTGTGTAACCAAATGTCCGGCACTGTCGTAGAAGTATGGA
ctctctcttcaattt CT-rich tract
actataattttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgacaatatacacaaccttagtgcaaactataattttgatttcagagtcttaactctctcttcaatttgacttcagGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGTATAAATGCTGTTTTACTTGTGTAACCAAATGTCCGGCACTGTCGTAGAAGTATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT