1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttctcattactatttaagaagagagtttcgctaagtaagaaagagcacgtatgcatcatcttggaactagtaagaattgatagagaaatgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG
species | Arabidopsis thaliana |
transcript | AT5G05930.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATCCCGCCAGTTCCAA GATACATGAGAGGATCTCGTCAAAATGCCTGGAGAACGCCCGGAAATCGTTEST: gi|19743498|gb|AU228851.1|AU228851
genomic: AGATCCCGCCAGTTCCAAgtaatgtttt ... tgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTT
EST: TATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCCCCAGTTCCAA GATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTEST: gi|86084319|gb|DR380078.1|DR380078
genomic: TATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCGCCAGTTCCAAgtaatgtttt ... tgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTT
EST: TATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCGCCAGTTCCAA GATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTT
genomic: TATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCGCCAGTTCCAAgtaatgtttt ... tgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTT
agcacgtatgcatcatcttggaactagtaagaattgatagagaaatgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG
aattgat putative branch site (score: 4)
aaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttctcattactatttaagaagagagtttcgctaagtaagaaagagcacgtatgcatcatcttggaactagtaagaattgatagagaaatgttttgcagGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA