1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtcaaaacctacataagtacatacactgtgattccatttctatgctatgcattataatagtacgtctccattgtctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAAACAGATCTTTGTCACAG
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAEST: gi|125018449|gb|EL090718.1|EL090718
genomic: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTA
EST: TCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAEST: gi|124938316|gb|EL014958.1|EL014958
genomic: TCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTA
EST: GATGGCTGATGTCTAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGEST: gi|124859021|gb|EH943458.1|EH943458
genomic: GATGGCTGATGTC-AACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGG
EST: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTEST: gi|116403963|gb|EG446555.1|EG446555
genomic: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTT
EST: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAEST: gi|86082088|gb|DR377847.1|DR377847
genomic: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTA
EST: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAEST: gi|164101714|gb|ES047273.1|ES047273
genomic: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTA
EST: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAG GGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAG
genomic: TGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGgtagtcaaaa ... tctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAG
tgattccatttctatgctatgcattataatagtacgtctccattgtctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAAACAGATCTTTGTCACAG
tctccattgtctctct CT-rich tract
tatgcattataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtcaaaacctacataagtacatacactgtgattccatttctatgctatgcattataatagtacgtctccattgtctctctcagGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAAACAGATCTTTGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT