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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttacgattattggagagttacaacagaacaatgtgtttgatacctctcatgtctaacttgatataaatggaaaatatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAATGATAAAACAGAAAGTTGATTCAGCCACAGAGAGAACCACCGATTGAAAC

Basic information

species Arabidopsis thaliana
transcript AT5G04430.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125209587|gb|EL224541.1|EL224541
EST:     CGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAG                         GAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAG
genomic: CGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAGgtaaagttac ... atatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAG
EST: gi|125188339|gb|EL203293.1|EL203293
EST:     ACCGAGGTGATTTTATGTCTGGAACCACTGATAG                         GAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT
genomic: ACCGAGGTGATTTTATGTCTGGAACCACTGATAGgtaaagttac ... atatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT
EST: gi|86078249|gb|DR374006.1|DR374006
EST:     CGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAG                         GAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT
genomic: CGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAGgtaaagttac ... atatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT
EST: gi|125132843|gb|EL174655.1|EL174655
EST:     ACCGAGGTGATTTTATGTCTGGTAACCACTGATAG                         GAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT
genomic: ACCGAGGTGATTTTATGTCTGG-AACCACTGATAGgtaaagttac ... atatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtgtttgatacctctcatgtctaacttgatataaatggaaaatatggacagGAAAGTGAGTATCACAGGGCCACAGAGAGCAATCCAACAAGCTGAGACAATGATAAAACAGAAAGTTGATTCAGCCACAGAGAGAACCACCGATTGAAAC
                                atataaatggaaaata  TA-rich tract