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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacaaataaaattttctcttgattttggtaatgaacttgttgtattaatgtctccaatgatcttgattcgctgtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 3'ss of exon 9
----gtgcacaaataaaattttctcttgattttggtaatgaacttgttg--------------tattaatgtctccaatgatcttgattcgctgtc--agGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
     |   || |     || |  | ||    || | ||| | || | |              || || |  |   |    | |    ||  |||   ||||||| ||||||||| ||||  | || || || |||||||| ||||||||||| || ||| | ||||| ||  | |||||||| |||||||| |||||||
gctactagccacaatgtgttgtgccctggccgtgtttatgcatttatagagcatccccatccttagtactcaccttatgagtttcttctcattgttatagGTTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAA

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 10
gtgcacaaataaaattttctcttgattttggtaatgaacttgttgtattaatgtctccaatgatcttgattcg---ctgtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
||   |    ||    |   | || |||     ||   ||| ||  ||   ||  | |  |    |||||  |    | | ||||||| |||||||||||  | || || || ||||||||| | || ||||| || |||||||| ||||| || || ||||| || ||||||||||| ||||
gtatgcttgaaagtcctaaccctgcttt-----atttgctttttagatatttgcttactgtttatttgatctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 9
gtgcacaaataaaattttctcttgattttggtaatgaa----cttgttgta-ttaatgtctccaatgatcttgattc--gctgt-----------------cagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
||  ||    ||  | || ||||| |||  | |   ||    |   ||| | || | || |    || | ||||||   |||||                  ||||||| ||||||||| || | || || || ||||||||| |  | |||||||| |||||| | ||||| ||| | ||||| || ||||||||||||||||
gtatactctgaagttcttatcttgttttgtgcagcaaaaacaccaattgcactttaagttttgcttgctattgatttgagctgtatttttacctctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAA

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G37570.1 (Glycine max), 3'ss of exon 9
--------------------------gtgcacaaataaaattttctcttgattttggtaatgaacttgttgtattaatgtctccaatgatcttgattcgct-gtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
                           ||  || | ||||       |  | |||     |   |||| |  ||| || |   |  |  | ||   ||  | |  ||||||| ||||||||| || | || || || ||||||||| |  | |||||||| |||||| | ||||| ||||| ||||| || || |||||||||||||
gtatgctctgaagttcttatcttgttttgtgcagaaaaaacaccaattgcactttaa-gttttgcttgct--attgatttgagctgtatttttacctcttttgctagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAA

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------gtgcacaaataaa-attttctcttgattttggtaatgaacttgttgtattaatgtctccaatgatcttgattcgctgtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
                                       || |||  ||| ||    |  |  |  ||||  | |   | |||  || || | |    | |   |  |||  ||  ||||| | |||||||||||||| || || || || || ||||| || |||||||| || || || || ||||||||||| ||||| ||||||||||| ||||
gtgcgtagtggcaaacatgcttatcaaattatgcactaagctcaagaaaatatcaattgctattcatggttttcatagttttggtttgatttata-gttcactgtctttctttgctagGTTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtaatgaacttgttgtattaatgtctccaatgatcttgattcgctgtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA
                 ttgtattaat  TA-rich tract