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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcattaattcttactatcaggctctgtacttgaaagtatttatgttgaaagaacattatggcatgctagatatatatcaagcaatgacagtagacttaggccaaccatatgttgaaaagggccctgcttggttacttatatactaagtgtgatgaagttcttccgacccatttatctgttccatagctcagGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCTGTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGAT

Basic information

species Arabidopsis thaliana
transcript AT5G03430.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA19G36860.1 (Glycine max), 3'ss of exon 8
gtaagtcattaattcttactatcaggctctgtacttgaaagtatttatgttgaaagaacattatggcatgctagatat-atatcaagcaatgacagtagacttaggccaaccatatgttgaaaagggccctgcttggttacttatatactaagtgtgatgaagttcttccgacccatttatctgttccatagctcagGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCTGTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGAT
                                                                           ||| || ||||||  ||  |||  |||    | ||  |  | || |         || |   |||  | |||        || ||| |||||      |  ||  ||||||||||||||||||| ||||| |||||||||||| || ||||  | |||||||| |||  ||  ||   | |||||||| |||   |||    ||||  | |  ||  ||
---------------------------------------------------------------------------tatcatgtcaagctgtg-tagtgaact---actaattaatttttta---------tgatcctttaactgtat--------tggtgatgttctctttttct-ttactctgttccatagctcagGTTTGGCATTGTTGAGGATCAGTTGGGACCTTATTTGTGTAGGAAACTGCATTGCATTGGTTGGTCTGTGTTTCAACATTCTGTTGTGCACAACAAT

upper sequence: AT5G03430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtcattaattcttactatcaggctctgtacttgaaagtatttatgttgaaagaacattatggcatgctagatatatatcaagcaatgacagtagacttaggccaac---catatgttg-aaaagggccctgcttggttacttatatactaagtgtgatgaagttcttccgacccatttatctgttccatagctcagGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCTGTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGAT
                                                                                            | ||  | ||   ||| |     | ||||  ||||     ||  |||   | || |||        |  |||| ||  |   |    | ||||| ||||||||||||||| |||||||||||||||| |||| ||||  || |||||||  ||| |   |||| | |||||||| |||  ||||||  |||||||||| ||||||
--------------------------------------------------------------------------------------------ctgttcaattttaccatcatttgtgtgtttcaaaaaaattctttttgagaatttttat--------tagtgaaatttctgatatttttctatctattccatagctcagGTTTGGCACTGTTGAGGATGAATTGGGACCTTCATTGTGTAGAAAGCTCCATTCTATAGGTTGGTCAGTGTCACAAACTGCTGTCCTTCGAAATGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124932556|gb|EL009803.1|EL009803
EST:     AACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAGAATTCT                         GTCTGGCACTGTTGAGGATC
genomic: AACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAGA-TTCTgtaagtcatt ... catagctcagGTCTGGCACTGTTGAGGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatactaagtgtgatgaagttcttccgacccatttatctgttccatagctcagGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCTGTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGAT
                                      tctgttcc  CT-rich tract
                                 atttatct  TA-rich tract