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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattttacttaatcttcttagtactttgatgttttcactctattagtcctcggttaagctcttattaaataatttctttttttgcttgttgaagATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGAT

Basic information

species Arabidopsis thaliana
transcript AT5G01460.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G07890.1 (Glycine max), 3'ss of exon 8
--gtttgtattttact-taatcttcttagtactttgatgttttcactctattagtcctcggttaagctcttattaaataatttctttttttgcttgttgaagATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGAT
   ||  ||| | ||| ||||   | | |    ||  | |      | |  |    ||||    |  | ||||  ||   |   ||||      |||   ||  | |||||||||||||| ||| ||||||| ||||| || |||||| |  |||||||||| || ||||||||  |||||||||||||||||||  |||||
ctcttactatctcactgtaatgagcattgcttattc-tataacaggtgttgtgtctctcgtcccatgtattatctaacc-taagttttgaaaactgtgccagGCTTATTGTTTCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGAT

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 8
gtttgtattttacttaatcttcttagtact-ttgatgttttcac---tctattagtcctcggttaagctcttattaaataatttctttttttgcttgttgaagATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGAT
  |  |  ||| || | | |  | || | |  | ||  | | ||   | |  |    | ||  | |  | ||||  ||   |   ||||      |||   || || || ||||||||||| ||| ||||||| ||||| || |||||| |  |||| ||||| || ||||||||  ||||||||||||||||||| ||||||
-ctcttgcttt-ctcactgtaatgagcattgcttattctataacaggtgttgtgtctcccgtctcatgtattatctaacc-taagttttgaaaactgtgccagGTTTATCGTTTCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGATCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGAT

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 8
gtttgtatttta-cttaatcttcttagtactttgatgttttcactctattagtcctcggttaagctcttattaaataatttctttttttgcttgttga--agATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGAT
| |    |  ||  ||  | |  ||  |||||   | ||| |  | | |   | ||| |     |  |||  || |    | | | |||| ||||| |  || || |||||||| ||||||||||||||||| ||| |||||||| | ||  |||| ||||| || ||||||||  | ||||| ||||||||||| || |||
gctcacctactagtttggtgtggtttttacttct-tatttactatgtgtctattctctgaaggacctttac-aagttgcatttctctttgtttgtttattagGTTGATTGTTTCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattagtcctcggttaagctcttattaaataatttctttttttgcttgttgaagATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGAT
                                 tttctttttttgcttg  CT-rich tract
              ttaagctcttattaaa  TA-rich tract