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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattctcgtcgatgattaaaataagtagattagttcatgcaatgatatgatacgatgtattgatttggctttttttctttaaacgtgatggcgtggcagAACGCGGCGGAGAAACCACCGTTTTTTATCCCTAGCTGGGCTGGAGTTTACGTGATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTCGGGTTCGGGT

Basic information

species Arabidopsis thaliana
transcript AT5G01240.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067802|gb|DR363559.1|DR363559
EST:     TCCCTGCCTTAGCCCACATGCTCACGTACCGCACCGCCTCTGCCCGCCGG                         AACGCGGCGGNA-AAACCACCGTTTTTTATCCCTAGCTGGGCTGGCAGTT-
genomic: TCCCTGCCTTAGCCCACATGCTCACGTACCGCACCGCCTCTGCCCGCCGGgtacctacat ... ggcgtggcagAACGCGGCGG-AGAAACCACCGTTTTTTATCCCTAGCTGGGCTGG-AGTTT
EST: gi|125316605|gb|EL330690.1|EL330690
EST:     CCTCTGCCCGCCGG                         AACGCGGCGGAGAAACCACCGTTTTTTATCCCTAGCTGGGCTGGAGTTTAC
genomic: CCTCTGCCCGCCGGgtacctacat ... ggcgtggcagAACGCGGCGGAGAAACCACCGTTTTTTATCCCTAGCTGGGCTGGAGTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatacgatgtattgatttggctttttttctttaaacgtgatggcgtggcagAACGCGGCGGAGAAACCACCGTTTTTTATCCCTAGCTGGGCTGGAGTTTACGTGATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTCGGGTTCGGGT
             tattgat  putative branch site (score: 3)
                         tttttttctttaaa  TA-rich tract