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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttagtttatatatcgcttaaaattatgaagtttcaccaaagaacaaaacgagattgtataatatctataatgaatttgtgtgtgttgtaatgtatccacagATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGATGAAACAAAGCCAACGAGAGTTTTTAACCATATGAACCGTTTTAATGTT

Basic information

species Arabidopsis thaliana
transcript AT4G39660.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164003225|gb|ES077630.1|ES077630
EST:     GAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAG                         ATTTCTTGGTAGATGCATTGGA
genomic: GAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAGgtaaattctt ... gtatccacagATTTCTTGGTAGATGCATTGGA
EST: gi|164083351|gb|ES191118.1|ES191118
EST:     TTCACTAAAGATGATGCAG                         T
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacag-
EST: gi|164083351|gb|ES191118.1|ES191118
EST:     TTCACTAAAGATGATGCAG                         T
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacag-
EST: gi|164222258|gb|EL992900.1|EL992900
EST:     TTCACTAAAGATGATGCAG                         ATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGA
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacagATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgagattgtataatatctataatgaatttgtgtgtgttgtaatgtatccacagATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGATGAAACAAAGCCAACGAGAGTTTTTAACCATATGAACCGTTTTAATGTT
      attgtataatatctat  TA-rich tract