1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggcattggaaatttctcaaaagaaatacatataaatatttttggatgatgaatggatgtgtcaattaatatatgattgatgcagAATGAAGACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATAACATTTTACAACCTGACGTATGCAATGGATAGGAGCTGGCACGTACTAG
species | Arabidopsis thaliana |
transcript | AT4G38270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATATCACTATTGGCAAGACTTG AATGAAGACAGAACACTGT-GAAGGCTGGGATCGTTGCCACCGGGGCTGATEST: gi|125303273|gb|EL317358.1|EL317358
genomic: ATATCACTATTGGCAAGACTTGgtaaggcatt ... attgatgcagAATGAAGACAGAACACTGTGGAA-GCTGGGATCGTTGCCACCGGGGCTGAT
EST: AAACGGAACATTACAGGGATATATCACTATTGGCGAGACTTG AATGAAGACAGAACACTGTGGAAGCTGGGATACGTTGCCACCGGGGCTGATEST: gi|86087494|gb|DR383253.1|DR383253
genomic: AAACGGAACATTACAGGGATATATCACTATTGGCAAGACTTGgtaaggcatt ... attgatgcagAATGAAGACAGAACACTGTGGAAGCTGGGAT-CGTTGCCACCGGGGCTGAT
EST: AGTGGAGGAAACGGAACATTACAGGGATATATCACTATTGGCAAGACTTG AATGAAGACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATA
genomic: AGTGGAGGAAACGGAACATTACAGGGATATATCACTATTGGCAAGACTTGgtaaggcatt ... attgatgcagAATGAAGACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATA
tataaatatttttggatgatgaatggatgtgtcaattaatatatgattgatgcagAATGAAGACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATAACATTTTACAACCTGACGTATGCAATGGATAGGAGCTGGCACGTACTAG
aattaatatatgattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcattggaaatttctcaaaagaaatacatataaatatttttggatgatgaatggatgtgtcaattaatatatgattgatgcagAATGAAGACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATAACATTTTACAACCTGACGTATGCAATGGATAGGAGCTGGCACGTACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT