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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaatctagcgtgatttttctcctcactgttcaagtagataaatgaggatgaaggctcgttttccccttttcagCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCAC

Basic information

species Arabidopsis thaliana
transcript AT4G38240.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38240.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G00230.1 (Glycine max), 3'ss of exon 8
----gtaatt--taatctagcgtgatttttctcctcactgttcaagtag--ataaatgagg---------atgaaggctcgttttcccctttt----cagCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCAC
     ||||   | || |   || |||      |  | |  |    ||   | |||  |||          |     ||  |  |     |||    |||||||||||||||||||||||    |||||| ||||||| ||  | ||||| |||||||| |||||||
ctctataatctctgatttgtggttattgagggacctaataatttgataataaaaaaccaggttctctatagtctgcactaataataatagtttgatgcagCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCTGGAGAGTTAACTGCTTACTACAAAATTGCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcactgttcaagtagataaatgaggatgaaggctcgttttccccttttcagCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCAC
 tcctcac  putative branch site (score: 2)
                                    ctcgttttcccctttt  putative PPT
                tagataaat  TA-rich tract