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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagattcaaaccatattctgacaatattttcggtttaacatgtttattggttaactatattcatcttctctttgttgtttcagGCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTC

Basic information

species Arabidopsis thaliana
transcript AT4G37080.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37080.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G20320.1 (Glycine max), 3'ss of exon 9
-------------gtttagattcaaaccatattctga----caatattttcggtttaacatgtttattggttaactatattcatcttctctttgttgtttcagGCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTC
               |||  |    |   |  | | |    |||||| |     | ||      |    |||||||| |   || |     |   ||| ||||||||| ||| | |||||||| || |  || |||||||||||||| || ||||| ||||||||||| || || ||| | || || 
tttaacaaacactacttaagtatgtaatgttctatcaatatcaatatatatctctaaatcaagatccaagttaactaaa---atatggcaatgcatgtgtcagGCAACGATAGTAGTGGGAGGCCAGTTTCTCAATGCAATCACAATAGAGCATTTTATCTTGAGACTGCCTTATCACCTCAAGTTT

upper sequence: AT4G37080.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv00s0804g00020.t01 (Vitis vinifera), 3'ss of exon 6
---gtttagattcaaaccatattct---gacaatattttcggtttaaca-tgtt-----tattggttaactatattcatcttctctttgttgtt--tcagGCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTC
   ||| |  ||| ||| ||| | |   ||||  || | | |  |  || || |     | |||   |||  ||  |   ||    || | |||  |||||||||||||| ||| ||||||  || ||| |||||||| ||||| || ||||||||||||||||| || || ||||||||||  
tcagttgactttccaacaatactttacggacatgatctcctgaatggcagtggtaatggtgttgaaaaacagtaaccgcttttcaattctggttcctcagGCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcggtttaacatgtttattggttaactatattcatcttctctttgttgtttcagGCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTC
                    ggttaac  putative branch site (score: 3)
                               ttcatcttctctttgt  putative PPT
     tttaacatgtttatt  TA-rich tract