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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgttctaaactcagacatcgagttgctgctttgtggccattctcgcatagtttctgaacttcttctacacagGGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGATAATGTGGGATGATAACTG

Basic information

species Arabidopsis thaliana
transcript AT4G37040.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37040.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv07s0031g00820.t01 (Vitis vinifera), 3'ss of exon 8
-------------------gtaagtttgttctaaactcagacatcga-gttgctgctttgtggccattctcgcatagtttctgaacttc--ttctacacagGGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGATAATGTGGGATGATAACTG
                    ||| | |||  || || || |    |       | | ||     |    |  |||   |  |    ||   ||||    |||||||||||| | |||||  ||||| ||||||||||||||||| ||||                                                    
cctctctctcccctcatgcataaatatgta-tatacacatattctgtcaaaattccattaaattctgcatgacatgactatttttttttggttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125187142|gb|EL202096.1|EL202096
EST:     CCACGGGGTTGGCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCC                         GGAACAATGAAGCTGGACGTATGGTC
genomic: CCACGGGGTTGGCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCgtaagtttgt ... ttctacacagGGAACAATGAAGCTGGACGTATGGTC
EST: gi|86077188|gb|DR372945.1|DR372945
EST:     CCACGGGGTTGGCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCC                         GGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAAC
genomic: CCACGGGGTTGGCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCgtaagtttgt ... ttctacacagGGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgagttgctgctttgtggccattctcgcatagtttctgaacttcttctacacagGGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGATAATGTGGGATGATAACTG
                                         cttcttctac  CT-rich tract
                             atagttt  TA-rich tract