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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgtctcatttaatcgagtaattttatatattttttggtccttagtttcatctcttaggtgttcgaacttggtttaaagattttgaatttggtgtatatagAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G36920.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262656|gb|EL276741.1|EL276741
EST:     GAACTCAATGCCG                         AGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCT
genomic: GAACTCAATGCCGgtaaattgtc ... gtgtatatagAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatctcttaggtgttcgaacttggtttaaagattttgaatttggtgtatatagAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCGATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAG
                          tttaaagattttgaat  TA-rich tract