1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtctcacaacacagtacttataatgaaacaactccattaaacactgtttcaggactttaattatatgtgctttggttgatgtgtgtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAACAGCCAGCTGGAGGTGGTGAAGCTGCTTGAGAAGGATGCTTTCCTTTGA
species | Arabidopsis thaliana |
transcript | AT4G35450.5 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGEST: gi|124726803|gb|EH818205.1|EH818205
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACG
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAAEST: gi|86084823|gb|DR380582.1|DR380582
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAAEST: gi|86079360|gb|DR375117.1|DR375117
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAAEST: gi|124753751|gb|EH843881.1|EH843881
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACEST: gi|125019352|gb|EL091621.1|EL091621
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGAC
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAEST: gi|125313311|gb|EL327396.1|EL327396
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGA
EST: TACGGGAGGAAAGAGTGTGTAAG-CTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTEST: gi|124923976|gb|EL002114.1|EL002114
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCT
EST: TGGAGAATGGTGCTGCAGT CACTTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAEST: gi|86079639|gb|DR375396.1|DR375396
genomic: TGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCAC-TCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAAEST: gi|124779392|gb|EH869335.1|EH869335
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGEST: gi|125220856|gb|EL234941.1|EL234941
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAG
EST: TGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAAEST: gi|124759358|gb|EH849488.1|EH849488
genomic: TGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACEST: gi|86081367|gb|DR377124.1|DR377124
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAAC
EST: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGT CACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
genomic: TACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTgtaagtctca ... gtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAA
aacactgtttcaggactttaattatatgtgctttggttgatgtgtgtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAACAGCCAGCTGGAGGTGGTGAAGCTGCTTGAGAAGGATGCTTTCCTTTGA
actttaattatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctcacaacacagtacttataatgaaacaactccattaaacactgtttcaggactttaattatatgtgctttggttgatgtgtgtggttgcagCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAACAGCCAGCTGGAGGTGGTGAAGCTGCTTGAGAAGGATGCTTTCCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG