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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctccttctttcctagtgcatttgaatatcagtttggactgaccttgatttcccatggaataaaaacctgtcaacaaaattcaaatatataaccaggactacaatttttttgcaactacagGTCGCAGGGCGCTTCACGTATGGAGTGATGGCACTCTCTGCAGCTACATTTACATTCTGGAATCTATTTGGTGCACATGTTCTTCCTTCTGCCTTGCATA

Basic information

species Arabidopsis thaliana
transcript AT4G33520.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33520.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G24520.1 (Glycine max), 3'ss of exon 4
gtctctccttctttcctagtgcatttgaatatcagtttggactgaccttgatttcccatggaataaaaacctgtcaacaaaattcaaatatataaccaggactacaatttttttgcaactacagGTCGCAGGGCGCTTCACGTATGGAGTGATGGCACTCTCTGCAGCTACATTTACATTCTGGAATCTATTTGGTGCACATGTTCTTCCTTCTGCCTTGCATA
     | | | | |  |  |   ||  | |       |  |||||   | | |         | | | | || ||| | ||||| ||  | || |             |||| || |  | ||||| || || | |||||| |||||||||||||||  |||||| || ||||| |||||||||| ||| | |||  ||||  || | ||| |||| ||  || 
----attcctttgttttcctttgttctactgctttactaaactgagtattactctt------acatatatctttca-ctaaattgaataacatca-------------ttttgtgtatatccagGTGGCTGGACACTTCACTTATGGAGTGATGGCAGCCTCTGCTGCCACATTCACATTCTGGAGTCTTTATGGCACACACATTTTACCTCCTGCTTTATATC

upper sequence: AT4G33520.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA08G07710.1 (Glycine max), 3'ss of exon 8
gtctctccttctttcctagtgcatttgaatatcagtttggactgaccttgatttcccatggaataaaaacctgtcaacaaaattcaaatatataaccaggactacaatttttttgcaactacagGTCGCAGGGCGCTTCACGTATGGAGTGATGGCACTCTCTGCAGCTACATTTACATTCTGGAATCTATTTGGTGCACATGTTCTTCCTTCTGCCTTGCATA
     | | | | | ||  ||| ||   | |     | |   |  ||||    ||| |      | | | || ||| | ||||| ||  | || |             |||| ||    | ||||| || || | |||||| |||||||||||||||  |||||| || ||||| |||||||||| ||| | |||  ||||  || | ||| |||| ||  || 
-----ttcctttgttcttctgctttactaaactgagtagtgttacccttacagtcctac-----atacatctttca-ctaaattgaataacatca-------------ttttgtgtttatccagGTGGCTGGACACTTCACTTATGGAGTGATGGCAACCTCTGCTGCCACATTCACATTCTGGAGTCTGTATGGCACACACATTTTACCTCCTGCTTTATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtcaacaaaattcaaatatataaccaggactacaatttttttgcaactacagGTCGCAGGGCGCTTCACGTATGGAGTGATGGCACTCTCTGCAGCTACATTTACATTCTGGAATCTATTTGGTGCACATGTTCTTCCTTCTGCCTTGCATA
                    atataac  putative branch site (score: 3)
                                      tttttttgc  putative PPT
      aacaaaattcaaatat  TA-rich tract