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...tatacggcaagtgtcagtctatgtttgacggttgtggccttgtattaaacaaccatgaccacgccagtaatgagtatcacttaaatttttcttaatgcagTTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGCAGTGACTCTGCCACCAGCAAAGCTTTATTTTAACTATGAGAACCAGGAA
species | Arabidopsis thaliana |
transcript | AT4G33240.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGG TTTTGGGAGAATGGTTGCTEST: gi|86069890|gb|DR365647.1|DR365647
genomic: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataaatag ... cttaatgcagTTTTGGGAGAATGGTTGCT
EST: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGG TTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGC
genomic: GTGGCCAACTGTGGTCATTCCCTTCACAGAGACTGTCTCCGGTTCTACGGgtataaatag ... cttaatgcagTTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGC
taaacaaccatgaccacgccagtaatgagtatcacttaaatttttcttaatgcagTTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGCAGTGACTCTGCCACCAGCAAAGCTTTATTTTAACTATGAGAACCAGGAA
tcttaat putative branch site (score: 3)
tttttctt CT-rich tract
tatcacttaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacggcaagtgtcagtctatgtttgacggttgtggccttgtattaaacaaccatgaccacgccagtaatgagtatcacttaaatttttcttaatgcagTTTTGGGAGAATGGTTGCTTGCTTCCGCTATGCTTCAATCAATATTTACGCAGTGACTCTGCCACCAGCAAAGCTTTATTTTAACTATGAGAACCAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG