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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaagtttcccacatttttaatcgaatatttgtacatattcaacaaagccaggagtcttattttacttaattgtcatggtctgtatactatagGTGATTAAAAAAGCGGAAGTCCTTTTTAATGAGGTTCAGGAGGCTCTTAGTCAAATTTCAGCGAAAACTATGGGCGCAGGTTCCAAGGGCAGCACTCCCA

Basic information

species Arabidopsis thaliana
transcript AT4G33240.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069890|gb|DR365647.1|DR365647
EST:     TTTATTTTAACTATGAGAACCAGGAATGGCTCCAAAAGGAATCAAAAGAG                         GTGATTAAAAAAGCGGAAGTCCTTTTTAATGAGGTTCAGGAGGCTCTTAGT
genomic: TTTATTTTAACTATGAGAACCAGGAATGGCTCCAAAAGGAATCAAAAGAGgttacaagtt ... tatactatagGTGATTAAAAAAGCGGAAGTCCTTTTTAATGAGGTTCAGGAGGCTCTTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaacaaagccaggagtcttattttacttaattgtcatggtctgtatactatagGTGATTAAAAAAGCGGAAGTCCTTTTTAATGAGGTTCAGGAGGCTCTTAGTCAAATTTCAGCGAAAACTATGGGCGCAGGTTCCAAGGGCAGCACTCCCA
                          acttaat  putative branch site (score: 4)
                 tcttattttacttaat  TA-rich tract