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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttataatatcgtgtttctgcttttattctaccattatgcactatttttctgtgctaaggagtccttgactgtttattttcctagCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32010.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S42_132V6.1 (Physcomitrella patens), 3'ss of exon 6
-------------------------------gtatgttataatatc-gtgtttctgcttttattctaccattatgcactatttttctgtgctaag-gagtccttgactgtttattttcctagCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAG
                                 || |  |   ||  | |||| ||   || || |    || |  |  |   | | ||   ||  | || ||||||  | ||||||  ||   ||||  |||  || |  ||  | || || ||| | |||||||| |||||||| ||||| ||||||||  |||| ||||| ||||||||||| |||
gtatcctttcagatttcatgcattcaatttctgatttcgtgggatgagggtttttgggatttttatgattttct-taaaagggtacagtttaaattgtgtacttgacaatgtattttagTA-TGCAAA--CCACCATCACTCCCTTGTTCGAGAAAATGCTGAGTGCCAGCGATGCTGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGTGCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accattatgcactatttttctgtgctaaggagtccttgactgtttattttcctagCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAG
                                 ccttgac  putative branch site (score: 4)
                                       ctgtttattttcct  CT-rich tract
                                        tgtttatttt  TA-rich tract