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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgggctaaaagatttgaaaattattatatcaaaagtctgatgtgaatgtgtctaaacattctaacttattcatattgttccccttgcagCTCCGATATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGATCTCTGGCGTTTTGAGCCTAGACAGAACTAGACCG

Basic information

species Arabidopsis thaliana
transcript AT4G28830.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740799|gb|AU226152.1|AU226152
EST:     GGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAG                         CTCCGATATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTT
genomic: GGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAGgttgggctaa ... ccccttgcagCTCCGATATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgatgtgaatgtgtctaaacattctaacttattcatattgttccccttgcagCTCCGATATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGATCTCTGGCGTTTTGAGCCTAGACAGAACTAGACCG
                        ttctaac  putative branch site (score: 1)
                                        ttgttcccctt  putative PPT
                           taacttattcatatt  TA-rich tract